Principal Investigator

About Bo

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Bo Wang

Bo Wang holds a joint tenure-track position as Assistant Professor within the Departments of Laboratory Medicine and Pathobiology and Computer Science at University of Toronto. He leads the AI team for Peter Munk Cardiac Centre (PMCC) at University Health Network (UHN). He is also a CIFAR AI Chair at Vector Institute, Toronto.

Bo obtained his PhD from the Department of Computer Science at Stanford University, and has extensive industrial research experience at many leading companies such as Illumina and Genentech. His PhD work covers statistical methods for solving problems in computational biology with an emphasis on integrative cancer analysis and single-cell analysis.

Bo Wang’s long-term research goals aim to develop integrative and interpretable machine learning algorithms that can help clinicians with predictive models and decision support to tailor patients’ care to their unique clinical and genomic traits.

Bo Wang

Google Scholar

Department of Laboratory Medicine and Pathobiology
Department of Computer Science
Peter Munk Cardiac Centre
Vector Institute

[email protected]

Current Members (Alphabetical Order)

About Adamo

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Adamo Young

I am a computer science PhD student, cosupervised by Dr. Wang and Dr. Hannes Rost. I develop new deep learning methods for mass-spectrometry based metabolomic analysis.

Adamo Young

Research Student

[email protected]

About Alaa

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Alaa Shamandy

I am a Computer Science graduate from the University of Toronto and I am currently working at Dr. Wang’s lab. My main focus is on novel Computer Vision applications specifically on Medical Images. Fun fact: My name is short for Aladdin.

Alaa Shamandy

Research Student

[email protected]

About Bonnie

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Bonnie Chao

Hi! I am a PhD student in biomedical engineering. I currently work on using machine learning methods to analyze donor lung X-ray images. During my spare time, I enjoy trivia, board games, piano, and singing.

Bonnie Chao

Research Student

[email protected]

About Duncan

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Duncan Forster

I work on integrating diverse biological networks using graph neural networks in order to discover new subsystems in the cell.

Duncan Forster

Research Student

[email protected]

About Emmy

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Emmy Fang

I received my BASc. in Engineering Science from the University of Toronto in 2021. I'm currently a MSc. student in Department of Computer Science, University of Toronto. My research interest is on privacy-preserving collaborative machine learning and its application on healthcare.

Emmy Fang

Research Student

[email protected]

About Haotian

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Haotian Cui

Haotian received the B.S. and M.S. degree in Biomedical Engineering from the Tsinghua University, China in 2015 and 2019. He is currently pursuing the Ph.D. degree at University of Toronto. His current research interests include computer vision, computational biology and machine learning.

Haotian Cui

Research Student

[email protected]

About Hassaan

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Hassaan Maan

I'm a research student working on single-cell sequencing projects, such as the integration of scATAC-seq and scRNA-seq data for improved cell-type discovery and identification.

Hassaan Maan

Research Student

[email protected]

About John

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John Giorgi

At a high-level, my research focuses on machine reading of biomedical literature and clinical notes. More specifically, this involves developing methods for the major components of text-mining and information extraction (IE) namely: named entity recognition (NER), named entity linking (NEL), and relation/event extraction (RE). The end goal is to develop a neural end-to-end system for machine reading of biomedical literature and clinical notes and to make the system freely available as an open-source tool.”

John Giorgi

Research Student

[email protected]

About Jun

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Jun Ma

Jun Ma is currently a Postdoctoral Fellow at University of Toronto. He received his Ph.D. degree in Mathematics at Nanjing University of Science and Technology. His research interests focus on medical image segmentation, including variational models, deep learning, and domain adaptation. He has published six first-author papers on top journals, such as TPAMI, TMI, MedIA, and SIIMS. He has won the champion of three international medical image analysis challenges (QUBIQ, EMIDEC, ADAM). He is the lead organizer of MICCAI 2021 FLARE Challenge.

Jun Ma

Post-doctoral Fellow

[email protected]

About Laura

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Laura Oliva

Currently a Research Associate with the Wang Lab, I am a recent MSc graduate of the University of Toronto’s Health Services Research program, with a focus in Health Service Outcomes and Evaluation. Presently, my research is centered on the application of machine learning methods to healthcare data, in particular cardiology.

Laura Oliva

Research Student

[email protected]

About Lin

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Lin Zhang

Lin received her HB.A in Statistics and B.A in Economics from University of California, Berkeley in 2012, and received her M.A in Applied Statistics from University of California, Santa Barbara in 2015. Lin is currently a PhD candidate in Statistics Department at University of Toronto. She works as a research student in Wang’s lab and her research focuses on machine learning methods for analyzing single-cell data.

Lin Zhang

Research Student

[email protected]

About Mehran

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Mehran Karimzadeh

I am interested in identifying upstream regulators of invasive tumours by investigating single-cell datasets

Mehran Karimzadeh

Post-doctoral Fellow

[email protected]

About Mica

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Mica Consens

Mica completed her undergrad in Computer Science, Bioinformatics and Biology at U of T in June 2021. She is currently a Computer Science Ph.D. student at U of T with a Focus in Machine Learning Applications for Healthcare in the Wang Lab. She is interested in developing novel computational methods to investigate biological questions whose answers could provide key insight into understanding human molecular machinery, and consequently into how we are ‘built’.

Mica Consens

Research Student

[email protected]

About Mohammed

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Mohammed Gad

I am a third year undergraduate Biomedical Engineering student at the University of Waterloo, currently a student AI researcher at WangLab. The research projects I work on are primarily focused on machine learning applications to healthcare data.

Mohammed Gad

Research Student

[email protected]

About Nasim

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Nasim Abdollahi

I am a Post-doctoral Fellow at University of Toronto, working with Wang lab and Cyclica Inc., an AI-Based Drug Discovery Company. My research is focused on graph-based machine learning algorithms that can better predict proteins’ biological functions from their 3D atomic structure.

Nasim Abdollahi

Post-doctoral Fellow

[email protected]

About Phil

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Phil Fradkin

Hello, I’m a research student interested in developing deep learning models for investigating impact of genomic variation in humans. After graduating undergrad at UofT in computer science and bioinformatics, I worked for a few years at a Toronto startup, Deep Genomics. This ignited my curiosity in the possibility of utilizing neural networks for connecting genotypic variation to phenotypic outcomes.

Phil Fradkin

Research Student

[email protected]

About Rashmi

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Rashmi Nedadur

Rashmi is a cardiac surgery resident interested in the use of machine learning algorithms in echocardiography automation, disease detection in cardiovascular imaging and outcome prognostication.

Rashmi Nedadur

Researcher

[email protected]

About Rex

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Rex Ma

Rex is currently a Computer Science Ph.D. student at the University of Toronto. He is a creative researcher and experienced software engineer. Rex is especially good at coding and mathematics, and his research focuses on machine learning, AI in healthcare, and computation biology.

Rex Ma

Research Student

[email protected]

About Ronald

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Ronald Xie

Ronald received his BSc in Microbiology and Immunology at the University of British Columbia in 2018. He then received his MPhil in Computational Biology at the Department of Applied Mathematics and Theoretical Physics at University of Cambridge in 2019. Ronald is currently a PhD candidate in Computational Biology and Molecular Genetics (CBMG) at the Faculty of Medicine at University of Toronto. His research interests lie in deep learning applications in electron microscopy and single cell omics.

Ronald Xie

Research Student

[email protected]

About Sarvagya

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Sarvagya Agrawal

I’m a recently graduated from UofT with a Specialist in Statistics (Machine Learning Stream) and a major in Molecular Biology. I’m currently working as a research intern at WangLab with a focus on single-cell sequencing projects. Specifically, my project is directed towards research in Medulloblastoma, a paediatric hindbrain cancer.

Sarvagya Agrawal

Research Student

[email protected]

About Sid

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Sidharth Gupta

Hello, my name is Sid, and I’m an undergraduate research student in the WangLab. I work primarily with computer vision models for cardiac images, and also with genome-wide-association-studies.

Sidharth Gupta

Research Student

[email protected]

About Zeinab

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Zeinab Navidi

Zeinab completed her BSc in Computer Engineering at the Sharif University of Technology and recently defended her MSc in Artificial Intelligence field. Currently, she is working as a summer research student in Machine Learning and Computational Biology at Wang's lab and her main focus are on single-cell data analysis. Single-cell is one of the hottest areas in computational biology and she is interested in developing novel practical tools using machine learning applications.

Zeinab Navidi

Research Student

[email protected]

Graduated Students

Fatemeh Darbeha    (Master, now Layer 6)

Past Lab Members

Chloe Wang    (Undergrad, now Omnia AI)
Claire Luo    (Undergrad, now Master at Columbia University)
Hossein Mousavi    (Post-doctoral Fellow, now Circle Neurovascular Imaging)
Ines Birimahire    (Master, now at H4H Humans4Help)
Ivy Yuan    (Undergrad, now Master at ETH Zurich)
Jesse Sun    (Undergrad, now University of Waterloo)
Karthik Bhaskar    (Master, now at CIBC)
Mark Zaidi    (Ph.D at UofT)
Osvald Nitski    (Undergrad, now at General Motors)
Sayan Nag    (Ph.D, now Toronto startup)
Shun Liao    (Ph.D at UofT)
Xindi Wang    (Master, now PhD at Westrn University)
Yini Yang    (Master, now Adobe)
Yuchen Wang    (Undergrad, now Master at Stanford University)

Past Visitors

Zhiyong Dou    (PhD at Huazhong University of Science and Technology, China)

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