Publications

Journals

Walter Nelson, Marinka Zitnik, Bo Wang, Jure Leskovec, Anna Goldenberg, Roded Sharan. To Embed or Not: Network Embedding as a Paradigm in Computational Biology. Frontiers in Genetics, 2019 .

M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman. Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities. Information Fusion, 2019 .

D Ramazzotti, A Lal, B Wang, S Batzoglou, A Sidow. Multi-omic tumor data reveal diversity of molecular mechanisms that correlate with survival. Nature Communications, 2018 .

Bo Wang, Armin Pourshafeie, Marinka Zitnik, Junjie Zhu, Carlos D Bustamante, Serafim Batzoglou, Jure Leskovec. Network Enhancement: a general method to denoise weighted biological networks. Nature Communications, 2018.

Bo Wang, Daniele Ramazzotti, Luca De Sano, Junjie Zhu, Emma Pierson, Serafim Batzoglou. SIMLR: A Tool for Large‐Scale Genomic Analyses by Multi‐Kernel Learning. Proteomics, 2018.

Bo Wang, Lin Huang, Yuke Zhu, Anshul Kundaje, Serafim Batzoglou, Anna Goldenberg. Vicus: Exploiting local structures to improve network-based analysis of biological data. PLoS Computational Biology, 2017 .

Nadya Andini, Bo Wang, Pornpat Athamanolap, Justin Hardick, Billie J Masek, Simone Thair, Anne Hu, Gideon Avornu, Stephen Peterson, Steven Cogill, Richard E Rothman, Karen C Carroll, Charlotte A Gaydos, Jeff Tza-Huei Wang, Serafim Batzoglou, Samuel Yang. Microbial typing by machine learned DNA melt signatures. Scientific Reports, 2017 .

Bo Wang, Junjie Zhu, Emma Pierson, Serafim Batzoglou. Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning. Nature Methods, 2017.

Solveig K Sieberts, Fan Zhu, Javier García-García, Eli Stahl, Abhishek Pratap, Gaurav Pandey, Dimitrios Pappas, Daniel Aguilar, Bernat Anton, Jaume Bonet, Ridvan Eksi, Oriol Fornés, Emre Guney, Hongdong Li, Manuel Alejandro Marín, Bharat Panwar, Joan Planas-Iglesias, Daniel Poglayen, Jing Cui, Andre O Falcao, Christine Suver, Bruce Hoff, Venkat SK Balagurusamy, Donna Dillenberger, Elias Chaibub Neto, Thea Norman, Tero Aittokallio, Chloe-Agathe Azencott, Víctor Bellón, Valentina Boeva, Kerstin Bunte, Himanshu Chheda, Lu Cheng, Jukka Corander, Michel Dumontier, Anna Goldenberg, Peddinti Gopalacharyulu, Mohsen Hajiloo, Daniel Hidru, Alok Jaiswal, Samuel Kaski, Beyrem Khalfaoui, Suleiman Ali Khan, Eric R Kramer, Pekka Marttinen, Aziz M Mezlini, Bhuvan Molparia, Matti Pirinen, Janna Saarela, Matthias Samwald, Véronique Stoven, Hao Tang, Jing Tang, Ali Torkamani, Jean-Phillipe Vert, Bo Wang, Tao Wang, Krister Wennerberg, Nathan E Wineinger, Guanghua Xiao, Yang Xie, Rae Yeung, Xiaowei Zhan, Cheng Zhao, Manuel Calaza, Haitham Elmarakeby, Lenwood S Heath, Quan Long, Jonathan D Moore, Stephen Obol Opiyo, Richard S Savage, Jun Zhu, Jeff Greenberg, Joel Kremer, Kaleb Michaud, Anne Barton, Marieke Coenen, Xavier Mariette, Corinne Miceli, Nancy Shadick, Michael Weinblatt, Niek de Vries, Paul P Tak, Danielle Gerlag, Tom WJ Huizinga, Fina Kurreeman, Cornelia F Allaart, S Louis Bridges Jr, Lindsey Criswell, Larry Moreland, Lars Klareskog, Saedis Saevarsdottir, Leonid Padyukov, Peter K Gregersen, Stephen Friend, Robert Plenge, Gustavo Stolovitzky, Baldo Oliva, Yuanfang Guan, Lara M Mangravite, Rheumatoid Arthritis Challenge Consortium. Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis. Nature Communications, 2016.

Lin Huang, Bo Wang, Ruitang Chen, Sivan Bercovici, Serafim Batzoglou. Reveel: large-scale population genotyping using low-coverage sequencing data. Bioinformatics, 2015.

Bo Wang, Aziz M Mezlini, Feyyaz Demir, Marc Fiume, Zhuowen Tu, Michael Brudno, Benjamin Haibe-Kains, Anna Goldenberg. Similarity network fusion for aggregating data types on a genomic scale. Nature Methods, 2014 .

Bo Wang, Wayne Enright. Parameter Estimation for ODEs Using a Cross-Entropy Approach. SIAM Journal on Scientific Computing (SISC), 2013.

Aziz M Mezlini, Bo Wang, Amit Deshwar, Quaid Morris, Anna Goldenberg. Identifying cancer specific functionally relevant miRNAs from gene expression and miRNA-to-gene networks using regularized regression. PloS One, 2013.

Wei Shen, Bo Wang, Yueming Wang, Xiang Bai, Longin Jan Latecki. Face identification using reference-based features with message passing model. Neurocomputing, 2013.

Xiang Bai, Bo Wang, Cong Yao, Wenyu Liu, Zhuowen Tu. Co-transduction for shape retrieval. IEEE Transactions on Image Processing (TIP), 2011 .

Jun Chen, Yu Zhou, Yajun Gao, Bo Wang, Lin-bo Luo, Wenyu Liu. Effective Improved Graph Transduction. JSW, 2011.

Conferences

Xingchao Peng, Qinxun Bai, Xide Xia, Zijun Huang, Kate Saenko, Bo Wang. Moment Matching for Multi-Source Domain Adaptation. International Conference on Computer Vision (ICCV), 2019 .

Siyuan Qiao, Wei Shen, Zhishuai Zhang, Bo Wang, Alan Yuille. Deep co-training for semi-supervised image recognition. European Conference on Computer Vision (ECCV), 2018 .

Zhishuai Zhang, Siyuan Qiao, Cihang Xie, Wei Shen, Bo Wang, Alan L Yuille. Single-shot object detection with enriched semantics. IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2018.

Wei Shen, Yilu Guo, Yan Wang, Kai Zhao, Bo Wang, Alan L Yuille. Deep regression forests for age estimation. IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2018.

Siyuan Qiao, Zhishuai Zhang, Wei Shen, Bo Wang, Alan Yuille. Gradually updated neural networks for large-scale image recognition. International Conference on Machine Learning (ICML), 2018.

Bo Wang, Junjie Zhu, Armin Pourshafeie, Oana Ursu, Serafim Batzoglou, Anshul Kundaje. Unsupervised learning from noisy networks with applications to Hi-C data. Advances in Neural Information Processing Systems (NIPS), 2016 .

Xun Shi, Bo Wang, John K Tsotsos. Early Recurrence Improves Edge Detection. Proceedings of the British Machine Vision Conference (BMVC), 2013.

Bo Wang, Zhuowen Tu, John K Tsotsos. Dynamic Label Propagation for Semi-supervised Multi-class Multi-label Classification. International Conference on Computer Vision (ICCV), 2013.

Bo Wang, Zhuowen Tu. Sparse Subspace Denoising for Image Manifolds. IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2013.

Bo Wang, Zhuowen Tu. Affinity learning via self-diffusion for image segmentation and clustering. IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2012.

Bo Wang, Jiayan Jiang, Wei Wang, Zhi-Hua Zhou, Zhuowen Tu. Unsupervised metric fusion by cross diffusion. IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2012.

Jiayan Jiang, Bo Wang, Zhuowen Tu. Unsupervised metric learning by self-smoothing operator. International Conference on Computer Vision (ICCV), 2011 .

Bo Wang, Wei Shen, Wenyu Liu, Xinge You, Xiang Bai. Shape classification using tree-unions. International Conference on Pattern Recognition (ICPR), 2010 .

Bo Wang, Xiang Bai, Xinggang Wang, Wenyu Liu, Zhuowen Tu. Object recognition using junctions. European Conference on Computer Vision (ECCV), 2010 .

Jun Chen, Yu Zhou, Bo Wang, Linbo Luo, Wenyu Liu. Rapid Shape Retrieval Using Improved Graph Transduction. International Conference on Information Engineering and Computer Science, 2009.

Jin Hu, Bo Wang, Jiao-long Wei, Shuang-lin Huang. Evolutionary game for distributed power allocation over cooperative relay networks. International Conference on Wireless Communications, Networking and Mobile Computing (WiCOM), 2009.

Yao Xu, Bo Wang, Wenyu Liu, Xiang Bai. Skeleton graph matching based on critical points using path similarity. Asian Conference on Computer Vision (ACCV), 2009.

Preprints

Zhishuai Zhang, Wei Shen, Siyuan Qiao, Yan Wang, Bo Wang, Alan Yuille. Robust Face Detection via Learning Small Faces on Hard Images. arXiv preprint, 2018.

Hengyue Pan, Bo Wang, Hui Jiang. Deep learning for object saliency detection and image segmentation. arXiv preprint, 2015.

Bo Wang, Anna Goldenberg. Gradient-based Laplacian Feature Selection. arXiv preprint, 2014 .

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